modules/busco_generateplot

BUSCO plot generation tool

genomefastaannotationbuscotranscriptomequality control

https://github.com/nf-core/modules/[...]/modules/nf-core/busco/generateplot

This module is deprecated.

Description

BUSCO plot generation tool

Input

name:type

description

pattern

`short_summary_txt`
`:file`

One or more short summary txt files from BUSCO

short_summary.*.txt

Output

name:type

description

pattern

`png`

`*.png`
`:file`

A summary plot in png format

*.png

`versions_busco`

`${task.process}`
`:string`

The name of the process

`busco`
`:string`

The name of the tool

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`busco`
`:string`

The name of the tool

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

The expression to obtain the version of the tool

Tools

busco
MIT

BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.

busco.ezlab.org busco.ezlab.org/busco_userguide https://gitlab.com/ezlab/busco 10.1007/978-1-4939-9173-0_14

modules/busco_generateplot

Description

Input

`short_summary_txt`
`:file`

Output

`png`

`*.png`
`:file`

`versions_busco`

`${task.process}`
`:string`

`busco`
`:string`

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`busco`
`:string`

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

Tools

busco
MIT

maintainer

get in touch

modules/busco_generateplot

Description

Input

short_summary_txt :file

Output

png

*.png :file

versions_busco

${task.process} :string

busco :string

busco --version 2> /dev/null | sed 's/BUSCO //g' :eval

Topics

versions

${task.process} :string

busco :string

busco --version 2> /dev/null | sed 's/BUSCO //g' :eval

Tools

buscoMIT

maintainer

get in touch

`short_summary_txt`
`:file`

`png`

`*.png`
`:file`

`versions_busco`

`${task.process}`
`:string`

`busco`
`:string`

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

`versions`

`${task.process}`
`:string`

`busco`
`:string`

`busco --version 2> /dev/null | sed 's/BUSCO //g'`
`:eval`

busco
MIT