Description

Create BWA index for reference genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information.
e.g. [ id:‘test’, single_end

]

fasta (file)

Input genome fasta file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information.
e.g. [ id:‘test’, single_end

]

index (file)

BWA genome index files

*.{amb,ann,bwt,pac,sa}

versions (file)

File containing software versions

versions.yml
included in
atacseq callingcards chipseq circdna circrna crisprseq fastquorum hgtseq hicar nascent oncoanalyser pathogensurveillance radseq raredisease rnadnavar sammyseq sarek ssds variantcatalogue
maintainers
Github user drpatelh
Github user maxulysse
Github user gallvp
get in touch
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Tools

bwa
GPL-3.0-or-later

BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.

http://bio-bwa.sourceforge.net bio-bwa.sourceforge.net/bwa.