Description

Create BWA index for reference genome

Input

name:type
description
pattern

meta:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

fasta:file

Input genome fasta file

Output

name:type
description
pattern

index

meta:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

*.{amb,ann,bwt,pac,sa}

bwa:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

*.{amb,ann,bwt,pac,sa}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bwa
GPL-3.0-or-later

BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.