Description

Create BWA-mem2 index for reference genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input genome fasta file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

index (file)

BWA genome index files

*.{0123,amb,ann,bwt.2bit.64,pac}

versions (file)

File containing software versions

versions.yml
included in
callingcards hgtseq nascent oncoanalyser radseq raredisease rnadnavar sarek
maintainer
Github user maxulysse
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

bwamem2
MIT

BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome.

github.com/bwa-mem2/bwa-mem2 github.com/bwa-mem2/bwa-mem2#usage