Performs alignment of BS-Seq reads using bwameth
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2:map
fasta:file
Input genome fasta file
meta3:map
index:directory
Directory containing bwameth genome index
bam
*.bam:file
Output BAM file containing read alignments
*.{bam}
versions
versions.yml:file
File containing software versions
versions.yml
Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome.
