Performs indexing of c2t converted reference genome
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Input genome fasta file
use_mem2{:bash}
:boolean
If true, use bwameth index-mem2 for indexing. If false, use bwameth index (default: false)
index{:bash}
:directory
Directory containing bwameth genome index
index
BwamethIndex{:bash}
versions_bwameth_index{:bash}
${task.process}{:bash}
:string
The name of the process
bwameth{:bash}
The name of the tool
bwameth.py --version | cut -f2 -d' '{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome.
