Performs indexing of c2t converted reference genome
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Input genome fasta file
use_mem2
:boolean
If true, use bwameth index-mem2 for indexing. If false, use bwameth index (default: false)
index
:directory
Directory containing bwameth genome index
BwamethIndex
versions_bwameth_index
${task.process}
:string
The name of the process
bwameth
The name of the tool
bwameth.py --version | cut -f2 -d' '
:eval
The expression to obtain the version of the tool
versions
Fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome.
