Description

CADD is a tool for scoring the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

vcf:file

Input file for annotation in vcf or vcf.gz format

*.{vcf,vcf.gz}

annotation_dir:file

Path to folder containing the vcf files with precomputed CADD scores. This folder contains the uncompressed files that would otherwise be in data/annotation folder as described in https://github.com/kircherlab/CADD-scripts/#manual-installation.

*.{vcf,vcf.gz}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv.gz:file

Annotated tsv file

*.{tsv,tsv.gz}

versions

versions.yml:file

File containing software versions

versions.yml