Description

Download CADD-SV annotation resources or SegmentNT model files.

Input

name:type
description
pattern

flag

:string

CADD-SV resource flag to download. Use annotations to download the CADD-SV annotation bundle, or segmentnt to download only the SegmentNT model files into <annotations-dir>/segment_nt.

annotations|segmentnt

Output

name:type
description
pattern

annotations

caddsv_annotations

:directory

Directory containing downloaded CADD-SV resources. If flag is annotations, this contains the CADD-SV annotation bundle. If flag is segmentnt, this contains SegmentNT files under segment_nt/. If flag is annotations and --with-segmentnt is supplied via task.ext.args, this contains both resources.

caddsv_annotations

versions_caddsv

${task.process}

:string

The process name

caddsv

:string

The tool name

caddsv --version

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process name

caddsv

:string

The tool name

caddsv --version

:eval

The expression to obtain the version of the tool

Tools

caddsv
MIT

CADD-SV is a command-line tool for scoring structural variants (SVs)

cadd-sv.bihealth.org github.com/kircherlab/CADD-SV 10.1101/gr.275995.121
maintainer
Github user manascripts
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