Hierarchical Hi-C compartment computation
meta{:bash}
:map
Groovy Map containing sample information. E.g. [ id:‘test’, single_end:false ]
cool{:bash}
:file
Path to COOL file
*.{cool.mcool}
resolution{:bash}
:integer
In case a .mcool file is provided, which resolution level to use for the analysis
output_folder{:bash}
${prefix}/{:bash}
:directory
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed)
intermediate_data_folder{:bash}
${prefix}/intermediate_data/{:bash}
Output folder containing intermediate data produced during the computation
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
