Hierarchical Hi-C compartment computation
meta
Groovy Map containing sample information. E.g. [ id:‘test’, single_end
input
Path to COOL file
*.{cool.mcool}
resolution
In case a .mcool file is provided, which resolution level to use for the analysis
versions
File containing software versions
versions.yml
output
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed)
intermediate_data
Output folder containing intermediate data produced during the computation
