Hierarchical Hi-C compartment computation
meta:map
Groovy Map containing sample information. E.g. [ id:‘test’, single_end
cool:file
Path to COOL file
*.{cool.mcool}
resolution:integer
In case a .mcool file is provided, which resolution level to use for the analysis
output_folder
${prefix}/:directory
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed)
intermediate_data_folder
${prefix}/intermediate_data/:directory
Output folder containing intermediate data produced during the computation
versions
versions.yml:file
File containing software versions
versions.yml
