Description

Hierarchical Hi-C compartment computation

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information. E.g. [ id:‘test’, single_end

]

cool:file

Path to COOL file

*.{cool.mcool}

resolution:integer

In case a .mcool file is provided, which resolution level to use for the analysis

Output

name:type
description
pattern

output_folder

meta:map

Groovy Map containing sample information. E.g. [ id:‘test’, single_end

]

${prefix}/:directory

Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed)

intermediate_data_folder

meta:map

Groovy Map containing sample information. E.g. [ id:‘test’, single_end

]

${prefix}/intermediate_data/:directory

Output folder containing intermediate data produced during the computation

versions

versions.yml:file

File containing software versions

versions.yml

Tools

calder2
MIT

Hierarchical Hi-C compartment computation