modules/canu
Accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Assemblypacbiohifinanopore
Description
Accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Input
Name (Type)
Description
Pattern
Canu mode depending on the input data (source and error rate)
-pacbio|-nanopore|-pacbio-hifi
Output
Name (Type)
Description
Pattern
Everything which could be assembled and is the full assembly, including both unique, repetitive, and bubble elements.
*.contigs.fasta
Reads and low-coverage contigs which could not be incorporated into the primary assembly.
*.unassembled.fasta
The corrected reads after overlap based trimming
*.trimmedReads.fasta.gz