Description

Cluster nucleotide sequences using sequence similarity

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

sequences:file

fasta or fastq file of sequences to be clustered

*.{fasta,fastq}

Output

name:type
description
pattern

fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{fa,fq}:file

fasta or fastq file of the representative sequences for each cluster

*.{fasta,fastq}

clusters

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.clstr:file

List of clusters

*.{clstr}

versions

versions.yml:file

File containing software versions

versions.yml