Description

Cluster nucleotide sequences using sequence similarity

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

sequences (file)

fasta or fastq file of sequences to be clustered

*.{fasta,fastq}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fasta (file)

fasta or fastq file of the representative sequences for each cluster

*.{fasta,fastq}

clusters (file)

List of clusters

*.{clstr}