Cluster nucleotide sequences using sequence similarity
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
sequences{:bash}
:file
fasta or fastq file of sequences to be clustered
*.{fasta,fastq}
fasta{:bash}
*.{fa,fq}{:bash}
fasta or fastq file of the representative sequences for each cluster
clusters{:bash}
*.clstr{:bash}
List of clusters
*.{clstr}
versions_cdhitest{:bash}
${task.process}{:bash}
:string
The name of the process
cdhit{:bash}
The name of the tool
cd-hit-est -h | sed -n '1s/.*version \([0-9.]*\).*/\1/p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Clusters and compares protein or nucleotide sequences
