cellpose segments cells in images
meta
Groovy Map containing sample information (sample id)
image
tif file for ready for segmentation
*.{tif,tiff}
model
Optional input file. Cellpose 2 model trained by user using human-in-the-loop approach.
Groovy Map containing sample information [sample id]
versions
File containing software versions
versions.yml
mask
labelled mask output from cellpose in tif format
*.{tif, tiff}
cellpose is an anatomical segmentation algorithm written in Python 3 by Carsen Stringer and Marius Pachitariu
