Description

Module to build a filtered GTF needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkgtf command.

Input

Name (Type)
Description
Pattern

gtf (file)

The reference GTF transcriptome file

*.gtf

Output

Name (Type)
Description
Pattern

gtf (directory)

The filtered GTF transcriptome file

*.filtered.gtf

versions (file)

File containing software version

versions.yml
included in
scrnaseq
maintainers
Github user ggabernet
Github user edmundmiller
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Tools

cellranger
10X Genomics EULA

Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.

support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov