Description

Module to build a filtered gtf needed by the 10x Genomics Cell Ranger Arc tool. Uses the cellranger-arc mkgtf command.

Input

name:type
description
pattern

gtf:file

The reference GTF transcriptome file

*.gtf

Output

name:type
description
pattern

gtf

*.filtered.gtf:directory

The filtered GTF transcriptome file

*.filtered.gtf

versions

versions.yml:file

File containing software version

versions.yml

Tools

cellrangerarc
10x Genomics EULA

Cell Ranger Arc by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.

support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc
included in
scrnaseq
maintainers
Github user ggabernet
Github user edmundmiller
Github user heylf
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