Build centrifuge database for taxonomic profiling
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
Fasta file containing sequences to be used in centrifuge database.
*.{fasta,fna}
conversion_table:file
A tab-separated file with sequence ID to taxonomy ID mapping
*.{map}
taxonomy_tree:file
A \t|\t-separated file mapping taxonomy. Typically nodes.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their parents
*.{dmp}
name_table:file
A ’|‘-separated file mapping taxonomy IDs to a name. Typically names.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their scientific name
size_table:file
Optional list of taxonomic IDs and lengths of the sequences belonging to the same taxonomic IDs.
*
cf
${prefix}/
${prefix}/:map
versions
versions.yml:file
File containing software versions
versions.yml
Classifier for metagenomic sequences
