Creates Kraken-style reports from centrifuge out files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
report
:file
File containing the centrifuge classification report
*.{txt}
db
:directory
Path to directory containing centrifuge database files
kreport
*.txt
File containing kraken-style report from centrifuge out files.
versions_centrifuge
${task.process}
:string
The name of the process
centrifuge
The name of the tool
centrifuge --version 2>&1 | sed '1!d;s/.* version //'
:eval
The expression to obtain the version of the tool
versions
Centrifuge is a classifier for metagenomic sequences.
