Description

Creates Kraken-style reports from centrifuge out files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

report:file

File containing the centrifuge classification report

*.{txt}

db:directory

Path to directory containing centrifuge database files

Output

name:type
description
pattern

kreport

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

File containing kraken-style report from centrifuge out files.

*.{txt}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

centrifuge
GPL v3

Centrifuge is a classifier for metagenomic sequences.