Description

CheckM2 database download

Input

name:type
description
pattern

db_zenodo_id{:bash}

:integer

Zenodo ID of the CheckM2 database to download

Output

name:type
description
pattern

database{:bash}

meta{:bash}

:map

Groovy Map containing database information e.g. [ id:'test', version:1 ]

checkm2_db_v${db_version}.dmnd{:bash}

:file

CheckM2 database file

checkm2_db_v*.dmnd

versions_checkm2_databasedownload{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

aria2{:bash}

:string

The tool name

aria2c --version 2>&1 | sed '1s/[^ ]* [^ ]* //; q'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

aria2{:bash}

:string

The tool name

aria2c --version 2>&1 | sed '1s/[^ ]* [^ ]* //; q'{:bash}

:eval

The expression to obtain the version of the tool

Tools

checkm2
GPL v3

CheckM2 - Rapid assessment of genome bin quality using machine learning