CheckM2 bin quality prediction
meta:map
Groovy Map containing sample information e.g. [ id:'test' ]
[ id:'test' ]
fasta:file
One or multiple FASTA files of each bin
*.{fasta,fna,fa}
dbmeta:map
Groovy Map containing database information e.g. [ id:'test', version:1 ]
[ id:'test', version:1 ]
db:file
CheckM2 database
checkm2_output
${prefix}:directory
CheckM2 output directory
${prefix}/
checkm2_tsv
${prefix}/quality_report.tsv:file
CheckM2 summary completeness statistics table
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
CheckM2 - Rapid assessment of genome bin quality using machine learning
