Description

CheckM2 bin quality prediction

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

dbmeta (map)

Groovy Map containing database information
e.g. [ id:'test', version:1 ]

fasta (file)

One or multiple FASTA files of each bin

*.{fasta,fna,fa}

db (file)

CheckM2 database

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

versions (file)

File containing software versions

versions.yml

checkm2_output (directory)

CheckM2 output directory

${prefix}/

checkm2_tsv (file)

CheckM2 summary completeness statistics table

*.tsv
maintainer
Github user dialvarezs
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Tools

checkm2
GPL v3

CheckM2 - Rapid assessment of genome bin quality using machine learning

github.com/chklovski/CheckM2 10.1038/s41592-023-01940-w