CheckM2 bin quality prediction
meta
:map
Groovy Map containing sample information e.g. [ id:'test' ]
[ id:'test' ]
fasta
:file
One or multiple FASTA files of each bin
*.{fasta,fna,fa}
dbmeta
Groovy Map containing database information e.g. [ id:'test', version:1 ]
[ id:'test', version:1 ]
db
CheckM2 database
checkm2_output
${prefix}
:directory
CheckM2 output directory
${prefix}/
checkm2_tsv
${prefix}_checkm2_report.tsv
CheckM2 summary completeness statistics table
*.tsv
versions_checkm2_predict
${task.process}
:string
The name of the process
checkm2
The name of the tool
checkm2 --version
:eval
The expression to obtain the version of the tool
versions
CheckM2 - Rapid assessment of genome bin quality using machine learning
