Description

Construct the database necessary for checkv’s quality assessment

Input

No input parameters

Output

name:type
description
pattern

checkv_db

${prefix}/*

:directory

directory pointing to database

${prefix}/

versions_checkv

${task.process}

:string

The name of the process

checkv

:string

The name of the tool

checkv -h 2>&1 | sed '1!d;s/^.*CheckV v//;s/:.*//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

checkv

:string

The name of the tool

checkv -h 2>&1 | sed '1!d;s/^.*CheckV v//;s/:.*//'

:eval

The expression to obtain the version of the tool

Tools

checkv
BSD License

Assess the quality of metagenome-assembled viral genomes.

bitbucket.org/berkeleylab/checkv 10.1038/s41587-020-00774-7
included in
phageannotatorviralmetagenome
maintainer
Github user Joon-Klaps
get in touch
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