modules/checkv_downloaddatabase

Construct the database necessary for checkv’s quality assessment

checkvcheckmmagmetagenomequalityisolatesviruscompletenesscontaminationdownloaddatabase

https://github.com/nf-core/modules/[...]/modules/nf-core/checkv/downloaddatabase

Description

Construct the database necessary for checkv’s quality assessment

Input

No input parameters

Output

name:type

description

pattern

`checkv_db{:bash}`

`${prefix}/*{:bash}`
`:directory`

directory pointing to database

${prefix}/

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

checkv
BSD License

Assess the quality of metagenome-assembled viral genomes.

bitbucket.org/berkeleylab/checkv 10.1038/s41587-020-00774-7

modules/checkv_downloaddatabase

Description

Input

Output

`checkv_db{:bash}`

`${prefix}/*{:bash}`
`:directory`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

checkv
BSD License

included in

maintainer

get in touch

modules/checkv_downloaddatabase

Description

Input

Output

checkv_db{:bash}

${prefix}/*{:bash}:directory

versions{:bash}

versions.yml{:bash}:file

Tools

checkv BSD License

included in

maintainer

get in touch

`checkv_db{:bash}`

`${prefix}/*{:bash}`
`:directory`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

checkv
BSD License