modules/checkv_updatedatabase

Construct the database necessary for checkv’s quality assessment

checkvcheckmmagmetagenomequalityisolatesviruscompletenesscontamination

https://github.com/nf-core/modules/[...]/modules/nf-core/checkv/updatedatabase

Description

Construct the database necessary for checkv’s quality assessment

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘sample’, bin:‘1’ ]

`fasta:file`

fasta file containing additional sequences for the existing checkv database

*.{fasta,fna,fa}

`db:directory`

directory pointing to existing checkV database to avoid redownloading the database

Output

name:type

description

pattern

`checkv_db`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘sample’, bin:‘1’ ]

`${prefix}/*:directory`

directory pointing to database

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

checkv
BSD License

Assess the quality of metagenome-assembled viral genomes.

bitbucket.org/berkeleylab/checkv 10.1038/s41587-020-00774-7

modules/checkv_updatedatabase

Description

Input

`meta:map`

`fasta:file`

`db:directory`

Output

`checkv_db`

`meta:map`

`${prefix}/*:directory`

`versions`

`versions.yml:file`

Tools

checkv
BSD License

maintainer

get in touch

modules/checkv_updatedatabase

Description

Input

meta:map

fasta:file

db:directory

Output

checkv_db

meta:map

${prefix}/*:directory

versions

versions.yml:file

Tools

checkv BSD License

maintainer

get in touch

`meta:map`

`fasta:file`

`db:directory`

`checkv_db`

`meta:map`

`${prefix}/*:directory`

`versions`

`versions.yml:file`

checkv
BSD License