Description

Indexes a fasta reference genome ready for chromatin profiling.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’ ]

fasta (file)

Fasta reference file.

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’ ]

index (file)

Index file of the reference genome

*.{index}

Tools

chromap
GPL v3

Fast alignment and preprocessing of chromatin profiles