Description

Indexes a fasta reference genome ready for chromatin profiling.

Input

name:type
description
pattern

meta:map

Groovy Map containing reference information e.g. [ id:‘test’ ]

fasta:file

Fasta reference file.

Output

name:type
description
pattern

index

meta:map

Groovy Map containing reference information e.g. [ id:‘test’ ]

*.index:file

Index file of the reference genome

*.{index}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

chromap
GPL v3

Fast alignment and preprocessing of chromatin profiles