Description

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta2 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta3 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta4 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta5 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta6 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta7 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

autozyg (file)

Bed file containing the regions of autozygosity

coverage (file)

Wig file containing the coverage information

exome (file)

Bed file containing the coverage for exome.

fracsnp (file)

Wig file containing the fraction of homozygous SNPs

ideogram (file)

Bed file containing information necessary for ideogram plots.
Format [‘chrom’, ‘start’, ‘end’, ‘name’, ‘gStain’]

regions (file)

Bed file containing UPD regions

sites (file)

Bed file containing UPD sites

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

plots (file)

Directory containing the plots in png format

*.png
included in
raredisease
maintainer
Github user ramprasadn
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

chromograph
MIT

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

github.com/Clinical-Genomics/chromograph github.com/Clinical-Genomics/chromograph/blob/master/README.md