Description

Annotate circRNAs detected in the output from CIRCexplorer2 parse

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

junctions (file)

Reformatted junctions file

*.{junction}

fasta (file)

Genome FASTA file

*.{fa,fasta}

gene_annotation (file)

Reformatted GTF file for CIRCexplorer2

*.{txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

txt (file)

Annotated circRNA TXT file

*.{txt}

versions (file)

File containing software versions

versions.yml