Annotate circRNAs detected in the output from CIRCexplorer2 parse
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
junctions{:bash}
:file
Reformatted junctions file
*.{junction}
fasta{:bash}
Genome FASTA file
*.{fa,fasta}
gene_annotation{:bash}
Reformatted GTF file for CIRCexplorer2
*.{txt}
txt{:bash}
*.txt{:bash}
Annotated circRNA TXT file
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Circular RNA analysis toolkits
