Annotate circRNAs detected in the output from CIRCexplorer2 parse
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
junctions
:file
Reformatted junctions file
*.{junction}
fasta
Genome FASTA file
*.{fa,fasta}
gene_annotation
Reformatted GTF file for CIRCexplorer2
*.{txt}
txt
*.txt
Annotated circRNA TXT file
versions_circexplorer2
${task.process}
:string
The name of the process
circexplorer2
The name of the tool
CIRCexplorer2 --version 2>&1; true
:eval
The expression to obtain the version of the tool
versions
Circular RNA analysis toolkits
