Description

CIRCexplorer2 parses fusion junction files from multiple aligners to prepare them for CIRCexplorer2 annotate.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fusions:file

BAM (BWA), BED (Segemehl), TXT (MapSplice), or Junction (STAR) file. Aligner will be autodetected based on file suffix.

*.{bam,junction,bed,txt}

Output

name:type
description
pattern

junction

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed:file

BED file

*.bed

versions

versions.yml:file

File containing software versions

versions.yml

Tools

included in
circrna
maintainer
Github user BarryDigby
get in touch
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