Description

A method to improve mappings on circular genomes, using the BWA mapper.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

reference (file)

Genome fasta file

*.fasta

elong (integer)

elongation value for the modified reference genome

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

fasta (file)

Genome fasta file

*.fasta

Tools

circulargenerator
GPL v3

Creating a modified reference genome, with an elongation of the an specified amount of bases