Runs the Clippy CLIP peak caller
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed:file
BED file of crosslinks
*.{bed,bed.gz}
gtf:file
A GTF file of genes to call peaks on
*.{gtf}
fai:file
FAI file corresponding to the reference sequence
*.{fai}
peaks
meta:file
BED file of peaks called by Clippy
*_broadPeaks.bed.gz
*_Peaks.bed:file
summits
BED file of peak summits called by Clippy
*[0-9].bed.gz
*_Summits.bed:file
intergenic_gtf
*_intergenic_regions.gtf:file
GTF file of intergenic regions
*_intergenic_regions.gtf
versions
versions.yml:file
File containing software versions
versions.yml
An intuitive and interactive peak caller for CLIP data
