Runs the Clippy CLIP peak caller
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed
BED file of crosslinks
*.{bed,bed.gz}
gtf
A GTF file of genes to call peaks on
*.{gtf}
fai
FAI file corresponding to the reference sequence
*.{fai}
peaks
BED file of peaks called by Clippy
*_broadPeaks.bed.gz
summits
BED file of peak summits called by Clippy
*[0-9].bed.gz
version
File containing software version
*.{version.txt}
An intuitive and interactive peak caller for CLIP data
