Calculates polymorphic site rates over protein coding genes
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM file
*.bam
bai:file
BAM index file
*.bai
gff:file
GFF file used to extract protein-coding genes
*.gff
fasta:file
Optional fasta file to run on a subset of references in the BAM file.
.{fa,fasta,fas,fna}
polymut
*.txt:file
Polymut report in .txt format.
.txt
*.txt
versions
versions.yml:file
File containing software versions
versions.yml
Set of utilities on sequences and BAM files
