Calculates polymorphic site rates over protein coding genes
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM file
*.bam
bai
BAM index file
*.bai
gff
GFF file used to extract protein-coding genes
*.gff
fasta
Optional fasta file to run on a subset of references in the BAM file.
.{fa,fasta,fas,fna}
versions
File containing software versions
versions.yml
polymut
Polymut report in .txt format.
.txt
*.txt
Set of utilities on sequences and BAM files