modules/cnvkit_call
Given segmented log2 ratio estimates (.cns), derive each segment’s absolute integer copy number
cnvkitbamfastacopy number
Description
Given segmented log2 ratio estimates (.cns), derive each segment’s absolute integer copy number
Tools
cnvkit Apache-2.0
CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
