CNVnator is a command line tool for CNV/CNA analysis from depth-of-coverage by mapped reads.
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
meta2
meta3
Groovy Map containing reference information e.g. [ id:'test' ]
[ id:'test' ]
meta4
bam
Sorted BAM/CRAM/SAM file
*.bam
bai
root
ROOT file
*.root
fasta
Path to a directory containing fasta files or a fasta file
*.fa
fai
Path to a fasta file index
*.fai
output_meta
versions
File containing software versions
versions.yml
A ROOT file
tab
A tab file containing cnvnator calls
*.tab
Tool for calling copy number variations.
