Description

convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

calls (file)

A tab file containing CNVnator calls

*.tab

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

vcf (file)

CNVnator calls in vcf format

*.vcf