convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
calls{:bash}
:file
A tab file containing CNVnator calls
*.tab
vcf{:bash}
*.vcf{:bash}
CNVnator calls in vcf format
*.vcf
versions_cnvnator{:bash}
${task.process}{:bash}
:string
The name of the process
cnvnator{:bash}
The name of the tool
cnvnator 2>&1 | sed -n '3s/CNVnator v//p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Tool for calling copy number variations.
