Description

convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

calls{:bash}

:file

A tab file containing CNVnator calls

*.tab

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.vcf{:bash}

:file

CNVnator calls in vcf format

*.vcf

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml