Command line tool for calling CNVs in whole genome sequencing data
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:โtestโ]
pytor{:bash}
:file
pytor file containing partitions of read depth histograms using mean-shift method
*.{pytor}
bin_sizes{:bash}
:string
list of binsizes separated by space e.g. โ1000 10000โ and โ1000โ
Groovy Map containing sample information e.g. [ id:โtestโ ]
${pytor.baseName}.pytor{:bash}
pytor files containing cnv calls
versions_cnvpytor{:bash}
${task.process}{:bash}
The name of the process
cnvpytor{:bash}
The name of the tool
cnvpytor --version | sed -n 's/.*CNVpytor \(.*\)/\1/p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
calling CNVs using read depth
