Command line tool for calling CNVs in whole genome sequencing data
meta:map
Groovy Map containing sample information e.g. [ id:โtestโ]
pytor:file
pytor file containing partitions of read depth histograms using mean-shift method
*.{pytor}
bin_sizes:string
list of binsizes separated by space e.g. โ1000 10000โ and โ1000โ
pytor
Groovy Map containing sample information e.g. [ id:โtestโ ]
${pytor.baseName}.pytor:file
pytor files containing cnv calls
versions
versions.yml:file
File containing software versions
versions.yml
calling CNVs using read depth
