Command line tool for calling CNVs in whole genome sequencing data
meta
Groovy Map containing sample information e.g. [ id:‘test’]
pytor
pytor file containing partitions of read depth histograms using mean-shift method
*.{pytor}
bin_sizes
list of binsizes separated by space e.g. “1000 10000” and “1000”
Groovy Map containing sample information e.g. [ id:‘test’ ]
pytor files containing cnv calls
versions
File containing software versions
versions.yml
calling CNVs using read depth