Description

Command line tool for calling CNVs in whole genome sequencing data

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:โ€˜testโ€™]

pytor:file

pytor file containing partitions of read depth histograms using mean-shift method

*.{pytor}

bin_sizes:string

list of binsizes separated by space e.g. โ€œ1000 10000โ€ and โ€œ1000โ€

Output

name:type
description
pattern

pytor

meta:map

Groovy Map containing sample information e.g. [ id:โ€˜testโ€™ ]

${pytor.baseName}.pytor:file

pytor files containing cnv calls

*.{pytor}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

cnvpytor
MIT

calling CNVs using read depth