calculates read depth histograms
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:โtestโ ]
pytor{:bash}
:file
pytor file containing read depth data
*.{pytor}
bin_sizes{:bash}
:string
list of binsizes separated by space e.g. โ1000 10000โ and โ1000โ
${pytor.baseName}.pytor{:bash}
pytor file containing read depth histograms binned based on given bin size(s)
versions_cnvpytor{:bash}
${task.process}{:bash}
The name of the process
cnvpytor{:bash}
The name of the tool
1.3.2{:bash}
The expression to obtain the version of the tool
versions{:bash}
calling CNVs using read depth
