Calculate segmentation for specified bin size (multiple bin sizes separate by space)
meta
:map
Groovy Map containing sample information e.g. [ id:โtestโ ]
pytor
:file
pytor file containing read depth data
*.{pytor}
bin_sizes
:string
list of binsizes separated by space e.g. โ1000 10000โ default is โ1000โ
${prefix}.pytor
pytor file
*.pytor
versions_cnvpytor
${task.process}
The process the versions were collected from
cnvpytor
The tool name
cnvpytor --version 2>&1 | sed -n 's/.*CNVpytor //p'
:eval
The expression to obtain the version of the tool
versions
Calling CNVs using read depth
