Description

Calculate segmentation for specified bin size (multiple bin sizes separate by space)

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:โ€˜testโ€™ ]

pytor:file

pytor file containing read depth data

*.{pytor}

bin_sizes:string

list of binsizes separated by space e.g. โ€œ1000 10000โ€ default is โ€œ1000โ€

Output

name:type
description
pattern

pytor

meta:map

Groovy Map containing sample information e.g. [ id:โ€˜testโ€™ ]

${prefix}.pytor:file

pytor file

*.pytor

versions

versions.yml:file

File containing software versions

versions.yml

Tools

cnvpytor
MIT

Calling CNVs using read depth