Description

partitioning read depth histograms

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

pytor (file)

pytor file containing read depth data

*.{pytor}

bin_sizes (string)

list of binsizes separated by space e.g. “1000 10000” and “1000”

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

partitions (file)

pytor file containing partitions of read depth histograms using mean-shift method

*.{pytor}

versions (file)

File containing software versions

versions.yml

Tools

cnvpytor
MIT

calling CNVs using read depth