view function to generate vcfs
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
pytor_files:file
pytor file containing cnv calls. To merge calls from multiple samples use a list of files.
*.{pytor}
bin_sizes:string
list of binsizes separated by space e.g. “1000 10000” and “1000”
output_format:string
output format of the cnv calls. Valid entries are “tsv”, “vcf”, and “xls”
vcf
*.vcf:file
vcf file containing cnv calls
*.{vcf}
tsv
*.tsv:file
tsv file containing cnv calls
*.{tsv}
xls
*.xls:file
xls file containing cnv calls
*.{xls}
versions
versions.yml:file
File containing software versions
versions.yml
calling CNVs using read depth
