view function to generate vcfs
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
pytor_files
pytor file containing cnv calls. To merge calls from multiple samples use a list of files.
*.{pytor}
bin_sizes
list of binsizes separated by space e.g. “1000 10000” and “1000”
output_format
output format of the cnv calls. Valid entries are “tsv”, “vcf”, and “xls”
tsv
tsv file containing cnv calls
*.{tsv}
vcf
vcf file containing cnv calls
*.{vcf}
xls
xls file containing cnv calls
*.{xls}
versions
File containing software versions
versions.yml
calling CNVs using read depth
