view function to generate vcfs
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
pytor_files
:file
pytor file containing cnv calls. To merge calls from multiple samples use a list of files.
*.{pytor}
bin_sizes
:string
list of binsizes separated by space e.g. “1000 10000” and “1000”
output_format
output format of the cnv calls. Valid entries are “tsv”, “vcf”, and “xls”
vcf
*.vcf
vcf file containing cnv calls
*.{vcf}
tsv
*.tsv
tsv file containing cnv calls
*.{tsv}
xls
*.xls
xls file containing cnv calls
*.{xls}
versions_cnvpytor
${task.process}
The name of the process
cnvpytor
The name of the tool
1.3.2
The expression to obtain the version of the tool
versions
calling CNVs using read depth
