modules/cobs_classicconstruct
Builds a classic bloom filter COBS index
COBSindexk-mer indexbloom filter
Input
name:type
description
pattern
The file or directory to be indexed. COBS can read:
- FASTA files (*.fa, *.fasta, *.fna, *.ffn, *.faa, *.frn, *.fa.gz, *.fasta.gz, *.fna.gz, *.ffn.gz, *.faa.gz, *.frn.gz),
- FASTQ files (*.fq, *.fastq, *.fq.gz., *.fastq.gz),
- “Multi-FASTA” and “Multi-FASTQ” files (*.mfasta, *.mfastq),
- McCortex files (*.ctx),
- or text files (*.txt). You can either recursively scan a directory for all files matching any of these files, or pass a *.list file which lists all paths COBS should index.
*.*maintainer
