modules/cobs_compactconstruct
Builds a compact bloom filter COBS index
COBSindexk-mer indexbloom filter
Input
Name (Type)
Description
Pattern
The file or directory to be indexed.
COBS can read:
- FASTA files (
\*.fa
,\*.fasta
,\*.fna
,\*.ffn
,\*.faa
,\*.frn
,\*.fa.gz
,\*.fasta.gz
,\*.fna.gz
,\*.ffn.gz
,\*.faa.gz
,\*.frn.gz
), - FASTQ files (
\*.fq
,\*.fastq
,\*.fq.gz.
,\*.fastq.gz
), - “Multi-FASTA” and “Multi-FASTQ” files (
\*.mfasta
,\*.mfastq
), - McCortex files (
\*.ctx
), - or text files (
\*.txt
).
You can either recursively scan a directory for all files matching any of these files,
or pass a\*.list
file which lists all paths COBS should index.
*.*