Generate the input coverage table for CONCOCT using a BEDFile
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed
BED file describing where each contig was cut up (typically output from CONCOCT’s cut_up_fasta.py)
*.bed
bamfiles
A single or list of BAM files of reads mapped back to original contigs (prior cutting up)
*.bam
baifiles
A single or list of BAM index files (.bai) corresponding to BAM
versions
File containing software versions
versions.yml
tsv
Contig coverage table
*.tsv
Clustering cONtigs with COverage and ComposiTion
