Description

Cut up fasta file in non-overlapping or overlapping parts of equal length.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

(Uncompressed) FASTA file containing contigs

*.{fasta,fna,fa,fas}

bed (boolean)

Specify whether to generate a BED file describing where each contig was cut up

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fasta (file)

Cut up fasta file in non-overlapping or overlapping parts of equal length.

*.fasta

bed (file)

Optional BED File containing locations on original contigs where they were cut up.

*.bed

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion