Description

Creates a FASTA file for each new cluster assigned by CONCOCT

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

original_fasta (file)

Original input FASTA file to CONOCT cut_up_fasta

*.{fasta,fna,fa,fas}

csv (boolean)

Output table of merge_cutup_clustering with new cluster assignments

.csv

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fasta (file)

FASTA files containing CONCOCT predicted bin clusters, named numerically by CONCOCT cluster ID in a directory called fasta_bins

*.fa.gz

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion