Creates a FASTA file for each new cluster assigned by CONCOCT
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
original_fasta{:bash}
:file
Original input FASTA file to CONOCT cut_up_fasta
*.{fasta,fna,fa,fas}
csv{:bash}
:boolean
Output table of merge_cutup_clustering with new cluster assignments
.csv
fasta{:bash}
${prefix}/*.fa.gz{:bash}
FASTA files containing CONCOCT predicted bin clusters, named numerically by CONCOCT cluster ID in a directory called fasta_bins
fasta_bins
*.fa.gz
versions_concoct{:bash}
${task.process}{:bash}
:string
The name of the process
concoct{:bash}
The name of the tool
concoct --version 2>&1 | sed -n 's/concoct //p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Clustering cONtigs with COverage and ComposiTion
