Description

Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

clustering_csv{:bash}

:file

Input cutup clustering result. Typically *_gt1000.csv from concoct

*.csv

Output

name:type
description
pattern

csv{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.csv{:bash}

:file

Cluster assignments per contig part with consensus cluster

*.csv

versions_concoct{:bash}

${task.process}{:bash}

:string

The name of the process

concoct{:bash}

:string

The name of the tool

concoct --version | cut -d " " -f2{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

concoct{:bash}

:string

The name of the tool

concoct --version | cut -d " " -f2{:bash}

:eval

The expression to obtain the version of the tool

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion

concoct.readthedocs.io/en/latest https://github.com/BinPro/CONCOCT 10.1038/nmeth.3103
included in
mag
maintainer
Github user jfy133
get in touch
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