Description

Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

clustering_csv:file

Input cutup clustering result. Typically *.gt1000.csv from concoct

*.csv

Output

name:type
description
pattern

csv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.csv:file

Cluster assignments per contig part with concensus cluster

*.csv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion