Description

Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

clustering_csv (file)

Input cutup clustering result. Typically *.gt1000.csv from concoct

*.csv

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

csv (file)

Cluster assignments per contig part with concensus cluster

*.csv
included in
mag
author
Github user jfy133
get in touch
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Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion

concoct.readthedocs.io/en/latest https://github.com/BinPro/CONCOCT 10.1038/nmeth.3103