Description

Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

clustering_csv (file)

Input cutup clustering result. Typically *.gt1000.csv from concoct

*.csv

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

csv (file)

Cluster assignments per contig part with concensus cluster

*.csv

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion