Description

Calculate confidence scores from Kraken2 output

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

kraken_result (file)

Raw Kraken2 standard output file

kraken_taxon_db (file)

Kraken2 taxo.k2d database file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

score (file)

Conifer report file containing confidence scores of Kraken2 classified reads.

*.score

versions (file)

File containing software versions

versions.yml

Tools

conifer
BSD / BSD-2-Clause

Calculate confidence scores from Kraken2 output