Calculate confidence scores from Kraken2 output
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
kraken_result
:file
Raw Kraken2 standard output file
kraken_taxon_db
Kraken2 taxo.k2d database file
score
*.score
Conifer report file containing confidence scores of Kraken2 classified reads.
versions_conifer
${task.process}
:string
The name of the process
conifer
The name of the tool
conifer --version 2>&1 | sed 's/^.*Conifer //'
:eval
The expression to obtain the version of the tool
versions
