Calculate confidence scores from Kraken2 output
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
kraken_result{:bash}
:file
Raw Kraken2 standard output file
kraken_taxon_db{:bash}
Kraken2 taxo.k2d database file
score{:bash}
*.score{:bash}
Conifer report file containing confidence scores of Kraken2 classified reads.
*.score
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
