Description

Plot Freec output

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

ratio:file

ratio file generated by FREEC

*.ratio.txt

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed:file

Bed file

*.bed

versions

versions.yml:file

File containing software versions

versions.yml

Tools

controlfreec
GPL >=2

Copy number and genotype annotation from whole genome and whole exome sequencing data.