Plot Freec output
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
ratio{:bash}
:file
ratio file generated by FREEC
*.ratio.txt
baf{:bash}
.BAF file generated by FREEC
*.BAF
png_baf{:bash}
*_BAF.png{:bash}
Image of BAF plot
*_BAF.png
png_ratio_log2{:bash}
*_ratio.log2.png{:bash}
Image of ratio log2 plot
*_ratio.log2.png
png_ratio{:bash}
*_ratio.png{:bash}
Image of ratio plot
*_ratio.png
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Copy number and genotype annotation from whole genome and whole exome sequencing data.
