Description

Create a cooler from genomic pairs and bins

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

pairs:file

Path to contacts (i.e. read pairs) file.

index:file

Path to index file of the contacts.

cool_bin:integer

Bins size in bp

chromsizes:file

Path to a chromsizes file.

Output

name:type
description
pattern

cool

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.cool:file

Output COOL file path

*.cool

cool_bin:file

Output COOL file path

*.cool

versions

versions.yml:file

File containing software versions

versions.yml