Description

Create a cooler from genomic pairs and bins

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pairs (file)

Path to contacts (i.e. read pairs) file.

index (file)

Path to index file of the contacts.

cool_bin (integer)

Bins size in bp

chromsizes (file)

Path to a chromsizes file.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

version (file)

File containing software version

versions.yml

cool (file)

Output COOL file path

*.cool

cool_bin (integer)

Bins size in bp