Description

Generate fragment-delimited genomic bins

Input

Name (Type)
Description
Pattern

fasta (file)

Genome assembly FASTA file or folder containing FASTA files (uncompressed).

*.{fasta,fa}

chromsizes (file)

Path to a chromsizes file.

enzyme (string)

Name of restriction enzyme. e.g. CviQI.

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

bed (file)

A genome segmentation of restriction fragments as a BED file.

*.{bed}