Generate fixed-width genomic bins
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
chromsizes{:bash}
:file
Path to a chromsizes file.
cool_bin{:bash}
:integer
Resolution (bin size) in base pairs
bed{:bash}
Groovy Map containing sample information
*.bed{:bash}
Genome segmentation at a fixed resolution as a BED file.
*.bed
versions_cooler{:bash}
${task.process}{:bash}
:string
The name of the process
cooler{:bash}
The name of the tool
cooler --version 2>&1 | sed "s/cooler, version //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Sparse binary format for genomic interaction matrices
