Description

Generate a multi-resolution cooler file by coarsening

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

cool

:file

Path to COOL file

*.{cool,mcool}

Output

name:type
description
pattern

mcool

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mcool

:file

Output mcool file

*.mcool

versions_cooler

${task.process}

:string

The name of the process

cooler

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

cooler

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"

:eval

The expression to obtain the version of the tool