Description

Generate a multi-resolution cooler file by coarsening

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

cool{:bash}

:file

Path to COOL file

*.{cool,mcool}

Output

name:type
description
pattern

mcool{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mcool{:bash}

:file

Output mcool file

*.mcool

versions_cooler{:bash}

${task.process}{:bash}

:string

The name of the process

cooler{:bash}

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

cooler{:bash}

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"{:bash}

:eval

The expression to obtain the version of the tool