Calculates peak-to-through ratio (PTR) from metagenomic sequence data
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
pkl
:file
Python pickle file containing coverage maps
*.pkl
ptr
*.csv
CSV table with rows as reference genomes, columns samples and entries as log2 PTR
versions_coptr
${task.process}
:string
The name of the process
coptr
The name of the tool
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
:eval
The expression to obtain the version of the tool
versions
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
